PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G008800.1
Common NameB456_006G008800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 354aa    MW: 39959.6 Da    PI: 6.0074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G008800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.44.5e-17188234455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Gorai.006G008800.1 188 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 234
                         6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-21183250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-18187238No hitNo description
PfamPF000102.2E-14188234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-21188244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-18190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSFKASICLA MNHCSSDWNF ESDLPISNQK KLLDNELVEL LWQNGKVVLQ SQTHKKQDDE  60
TVSWIQHPFE ESFEKEMFSN FFSEFPVYDP MDHQHEQQED DKNLSRGSSN GIGTTSTGLS  120
VGTSKDDEDD DNGGQVENEK GTSGGVTSSQ KRKNRDGRED YECQCEFAEV KPVRRSGSCR  180
RQSRAAEVHN LSERRRRDRI NEKMRALQEL IPHCNKTDKA SMLDEAIEYL KSLQLQLQVM  240
WMGNGMAPMM FPGIQHYMSP MAMGTAPPTM PSIQNQRFIQ NPTFSEQYAR FLGFHHMQTA  300
SQPINMFGYG SQTTPQSPTV LGFSNGSNPL NGGTTATNNT SLSGKIVLWR LLY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5258024e-67HQ525802.1 Gossypium herbaceum clone NBRI_D_EYT27PB02DXEGO simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048908.11e-101Phytochrome interacting factor 3-like 6, putative isoform 1
RefseqXP_007048912.11e-102Phytochrome interacting factor 3-like 6, putative isoform 5
SwissprotQ84LH87e-53PIF5_ARATH; Transcription factor PIF5
TrEMBLA0A0D2SQ620.0A0A0D2SQ62_G
STRINGPOPTR_0002s05630.16e-74(Populus trichocarpa)
STRINGPOPTR_0005s22870.15e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.41e-39phytochrome interacting factor 3-like 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]